[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 60 items for (author: zhang & hq)

EMDB-35416:
Cryo-EM structure of the Clr6S (Clr6-HDAC) complex from S. pombe
Method: single particle / : Zhang HQ, Wang X, Wang YN, Liu SM, Zhang Y, Xu K, Ji LT, Kornberg RD

EMDB-35417:
Clr6 HDAC (Clr6S)-nucleosome complex
Method: single particle / : Zhang HQ

EMDB-36278:
Rpd3S-nucleosome (H3K36me3 modified)
Method: single particle / : Wang X, Wang YN, Liu SM, Zhang Y, Xu K, Ji LT, Kornberg RD, Zhang HQ

EMDB-27205:
Closed state of SARS-CoV-2 BA.2 variant spike protein
Method: single particle / : Zhang J, Tang WC, Gao HL, Shi W, Peng HQ, Volloch SR, Xiao TS, Chen B

EMDB-27206:
One RBD-up state of SARS-CoV-2 BA.2 variant spike protein
Method: single particle / : Zhang J, Tang WC, Gao HL, Shi W, Peng HQ, Volloch SR, Xiao TS, Chen B

EMDB-27207:
Middle state of SARS-CoV-2 BA.2 variant spike protein
Method: single particle / : Zhang J, Tang WC, Gao HL, Shi W, Peng HQ, Volloch SR, Xiao TS, Chen B

EMDB-29016:
Cryo-EM structure of SARS-CoV-2 postfusion spike in membrane
Method: single particle / : Zhang J, Shi W, Cai YF, Zhu HS, Peng HQ, Voyer J, Volloch SR, Cao H, Mayer ML, Song KK, Xu C, Lu JM, Chen B

EMDB-29017:
Cryo-EM structure of SARS-CoV-2 postfusion spike in membrane
Method: single particle / : Zhang J, Shi W, Cai YF, Zhu HS, Peng HQ, Voyer J, Volloch SR, Cao H, Mayer ML, Song KK, Xu C, Lu JM, Chen B

EMDB-29018:
Cryo-EM structure of SARS-CoV-2 postfusion spike in membrane
Method: single particle / : Zhang J, Shi W, Cai YF, Zhu HS, Peng HQ, Voyer J, Volloch SR, Cao H, Mayer ML, Song KK, Xu C, Lu JM, Chen B

EMDB-33796:
The NuA4 histone acetyltransferase complex from S. cerevisiae
Method: single particle / : Ji LT, Zhao LX, Xu K, Gao HH, Zhou Y, Kornberg RD, Zhang HQ

EMDB-40094:
17b10 fab in complex with full-length SARS-CoV-2 Spike G614 trimer
Method: single particle / : Kwon HJ, Zhang J, Kosikova M, Tang WC, Rodriguez UO, Peng HQ, Meseda CA, Pedro CL, Schmeisser F, Lu JM, Zhou B, Davis CT, Wentworth DE, Chen WH, Shriver MC, Pasetti MF, Weir JP, Chen B, Xie H

EMDB-40095:
17B10 fab in complex with up-RBD of SARS-CoV-2 Spike G614 trimer
Method: single particle / : Kwon HJ, Zhang J, Kosikova M, Tang WC, Rodriguez UO, Peng HQ, Meseda CA, Pedro CL, Schmeisser F, Lu JM, Zhou B, Davis CT, Wentworth DE, Chen WH, Shriver MC, Pasetti MF, Weir JP, Chen B, Xie H

EMDB-35522:
Cryo-EM structure of the TUG891 bound GPR120-Giq complex(mask on receptor)
Method: single particle / : Mao C, Xiao P, Tao X, Qin J, He Q, Zhang C, Yu X, Zhang Y, Sun J

EMDB-35523:
Cryo-EM structure of the TUG891 bound GPR120-Giq complex(mask on Giq-scFV16 complex)
Method: single particle / : Mao C, Xiao P, Tao X, Qin J, He Q, Zhang C, Yu X, Zhang Y, Sun J

EMDB-35524:
Cryo-EM structure of the eicosapentaenoic acid bound GPR120-Gi1 complex(mask on receptor)
Method: single particle / : Mao C, Xiao P, Tao X, Qin J, He Q, Zhang C, Yu X, Zhang Y, Sun J

EMDB-35525:
Cryo-EM structure of the eicosapentaenoic acid bound GPR120-Gi1 complex(mask on Gil-scFV16 complex)
Method: single particle / : Mao C, Xiao P, Tao X, Qin J, He Q, Zhang C, Yu X, Zhang Y, Sun J

EMDB-35529:
Cryo-EM structure of the TUG891 bound GPR120-Giq complex (consensus map)
Method: single particle / : Mao C, Xiao P, Tao X, Qin J, He Q, Zhang C, Yu X, Zhang Y, Sun J

EMDB-35533:
Cryo-EM structure of the eicosapentaenoic acid bound GPR120-Gi complex(consensus map)
Method: single particle / : Mao C, Xiao P, Tao X, Qin J, He Q, Zhang C, Yu X, Zhang Y, Sun J

EMDB-35356:
Cryo-EM structure of the 9-hydroxystearic acid bound GPR120-Gi complex
Method: single particle / : Mao C, Xiao P, Tao X, Qin J, He Q, Zhang C, Yu X, Zhang Y, Sun J

EMDB-35357:
Cryo-EM structure of the linoleic acid bound GPR120-Gi complex
Method: single particle / : Mao C, Xiao P, Tao X, Qin J, He Q, Zhang C, Yu X, Zhang Y, Sun J

EMDB-35358:
Cryo-EM structure of the oleic acid bound GPR120-Gi complex
Method: single particle / : Mao C, Xiao P, Tao X, Qin J, He Q, Zhang C, Yu X, Zhang Y, Sun J

EMDB-35359:
Cryo-EM structure of the TUG891 bound GPR120-Gi complex
Method: single particle / : Mao C, Xiao P, Tao X, Qin J, He Q, Zhang C, Yu X, Zhang Y, Sun J

EMDB-35360:
Cryo-EM structure of the eicosapentaenoic acid bound GPR120-Gi complex
Method: single particle / : Mao C, Xiao P, Tao X, Qin J, He Q, Zhang C, Yu X, Zhang Y, Sun J

EMDB-29736:
Cryo-EM structure of the TUG891 bound GPR120-Giq complex
Method: single particle / : Mao C, Xiao P, Tao X, Qin J, He Q, Zhang C, Yu X, Zhang Y, Sun J

EMDB-33794:
Core module of the NuA4 complex in S. cerevisiae
Method: single particle / : Ji LT, Zhao LX, Xu K, Gao HH, Zhou Y, Kornberg RD, Zhang HQ

EMDB-32356:
Computational design of a potent Epstein-Barr virus fusion protein gB nanoparticle vaccine
Method: subtomogram averaging / : Sun C, Wang AJ, Fang XY, Gao YZ, Liu Z, Zeng MS

EMDB-32088:
Computational design of a potent Epstein-Barr virus fusion protein gB nanoparticle vaccine
Method: single particle / : Sun C, Fang XY, Wang AJ, Liu Z, Zeng MS

EMDB-26676:
Three RBD-down state of SARS-CoV-2 D614G spike in complex with the SP1-77 neutralizing antibody Fab fragment
Method: single particle / : Zhang J, Luo S, Kreutzberger A, Kirchhausen T, Chen B, Haynes B, Alt F

EMDB-26677:
Three RBD-down state of SARS-CoV-2 D614G spike in complex with the SP1-77 neutralizing antibody Fab fragment (local refinement of the RBD and Fab variable domains)
Method: single particle / : Zhang J, Luo S, Kreutzberger A, Kirchhausen T, Chen B, Haynes B, Alt F

EMDB-26678:
An antibody from single human VH-rearranging mouse neutralizes all SARS-CoV-2 variants through BA.5 by inhibiting membrane fusion
Method: single particle / : Zhang J, Luo S, Kreutzberger A, Kirchhausen T, Chen B, Haynes B, Alt F

EMDB-27043:
Negative stain electron microscopy single particle reconstruction of monoclonal antibody SP1-77 Fab in complex with SARS-CoV2 2P spike
Method: single particle / : Edwards RJ, Mansouri K

EMDB-27044:
Negative stain electron microscopy single particle reconstruction of monoclonal antibody VHH7-7-53 Fab in complex with SARS-CoV2 2P spike
Method: single particle / : Edwards RJ, Mansouri K

EMDB-27046:
Negative stain electron microscopy single particle reconstruction of monoclonal antibody VHH7-5-82 Fab in complex with SARS-CoV2 2P spike
Method: single particle / : Edwards RJ, Mansouri K

EMDB-26021:
Structural and functional impact by SARS-CoV-2 Omicron spike mutations
Method: single particle / : Zhang J, Xiao TS, Cai YF, Peng HQ, Volloch SR, Chen B

EMDB-26029:
Structural and functional impact by SARS-CoV-2 Omicron spike mutations
Method: single particle / : Zhang J, Xiao TS, Cai YF, Peng HQ, Volloch SR, Chen B

EMDB-24982:
One RBD-up 1 of pre-fusion SARS-CoV-2 Delta variant spike protein
Method: single particle / : Zhang J, Xiao TS, Cai YF, Peng HQ, Volloch SR, Chen B

EMDB-24988:
One RBD-up 2 of pre-fusion SARS-CoV-2 Gamma variant spike protein
Method: single particle / : Zhang J, Xiao TS, Cai YF, Peng HQ, Volloch SR, Chen B

EMDB-24981:
Closed state of pre-fusion SARS-CoV-2 Delta variant spike protein
Method: single particle / : Zhang J, Xiao TS, Cai YF, Peng HQ, Volloch SR, Chen B

EMDB-24983:
One RBD-up 2 of pre-fusion SARS-CoV-2 Delta variant spike protein
Method: single particle / : Zhang J, Xiao TS, Cai YF, Peng HQ, Volloch SR, Chen B

EMDB-24984:
Closed state of pre-fusion SARS-CoV-2 Kappa variant spike protein
Method: single particle / : Zhang J, Xiao TS, Cai YF, Peng HQ, Volloch SR, Chen B

EMDB-24985:
One RBD-up 1 of pre-fusion SARS-CoV-2 Kappa variant spike protein
Method: single particle / : Zhang J, Xiao TS, Cai YF, Peng HQ, Volloch SR, Chen B

EMDB-24986:
One RBD-up 2 of pre-fusion SARS-CoV-2 Kappa variant spike protein
Method: single particle / : Zhang J, Xiao TS, Cai YF, Peng HQ, Volloch SR, Chen B

EMDB-24987:
One RBD-up 1 of pre-fusion SARS-CoV-2 Gamma variant spike protein
Method: single particle / : Zhang J, Xiao TS, Cai YF, Peng HQ, Volloch SR, Chen B

EMDB-24121:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF, Xiao TS, Rawson S, Peng HQ, Sterling SM, Walsh Jr RM, Volloch SR, Chen B

EMDB-24122:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF, Xiao TS, Rawson S, Peng HQ, Sterling SM, Walsh Jr RM, Volloch SR, Chen B

EMDB-24123:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF, Xiao TS, Rawson S, Peng HQ, Sterling SM, Walsh Jr RM, Volloch SR, Chen B

EMDB-24124:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF, Xiao TS, Rawson S, Peng HQ, Sterling SM, Walsh Jr RM, Volloch SR, Chen B

EMDB-24125:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF, Xiao TS, Rawson S, Peng HQ, Sterling SM, Walsh Jr RM, Volloch SR, Chen B

EMDB-24126:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF, Xiao TS, Rawson S, Peng HQ, Sterling SM, Walsh Jr RM, Volloch SR, Chen B

EMDB-24127:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF, Xiao TS, Rawson S, Peng HQ, Sterling SM, Walsh Jr RM, Volloch SR, Chen B

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more